Alignment Stats
| Sequences analysed in total |
605809374 |
| Single-end alignments with a unique best hit |
184983541 |
| Sequences without alignments under any condition |
179447426 |
| Sequences that did not map uniquely |
241378407 |
| Genomic sequence context not extractable (edges of chromosomes) |
3 |
|
|
Cytosine Methylation
| Total C's analysed |
1150617798 |
| Methylated C's in CpG context |
174688062 |
| Methylated C's in CHG context |
5203372 |
| Methylated C's in CHH context |
61461946 |
| Methylated C's in Unknown context |
52708 |
| Unmethylated C's in CpG context |
30920274 |
| Unmethylated C's in CHG context |
230451229 |
| Unmethylated C's in CHH context |
647892915 |
| Unmethylated C's in Unknown context |
362895 |
| Percentage methylation (CpG context) |
85.0% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
42432699 |
original top strand |
| CTOT |
50418251 |
complementary to original top strand |
| CTOB |
50016394 |
complementary to original bottom strand |
| OB |
42116194 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
184983538 |
| Unique alignments |
60848155 |
| Duplicates removed |
124135383 |
| Duplicated alignments were found at 20776616 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
362887673 |
| Methylated C's in CpG context |
37503474 |
| Methylated C's in CHG context |
2098223 |
| Methylated C's in CHH context |
31599525 |
| Unmethylated C's in CpG context |
11075480 |
| Unmethylated C's in CHG context |
61396504 |
| Unmethylated C's in CHH context |
219214467 |
| Percentage methylation (CpG context) |
77.2% |
| Percentage methylation (CHG context) |
3.3% |
| Percentage methylation (CHH context) |
12.6% |
|
|
M-Bias Plot
