zr1394_all_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 60848155 lines in total Total number of methylation call strings processed: 60848155 Final Cytosine Methylation Report ================================= Total number of C's analysed: 362887673 Total methylated C's in CpG context: 37503474 Total methylated C's in CHG context: 2098223 Total methylated C's in CHH context: 31599525 Total C to T conversions in CpG context: 11075480 Total C to T conversions in CHG context: 61396504 Total C to T conversions in CHH context: 219214467 C methylated in CpG context: 77.2% C methylated in CHG context: 3.3% C methylated in CHH context: 12.6%