Alignment Stats
| Sequences analysed in total |
77350922 |
| Single-end alignments with a unique best hit |
25240310 |
| Sequences without alignments under any condition |
22010659 |
| Sequences that did not map uniquely |
30099953 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
150063744 |
| Methylated C's in CpG context |
16646053 |
| Methylated C's in CHG context |
573090 |
| Methylated C's in CHH context |
8128400 |
| Methylated C's in Unknown context |
5241 |
| Unmethylated C's in CpG context |
4057189 |
| Unmethylated C's in CHG context |
28845101 |
| Unmethylated C's in CHH context |
91813911 |
| Unmethylated C's in Unknown context |
42803 |
| Percentage methylation (CpG context) |
80.4% |
| Percentage methylation (CHG context) |
1.9% |
| Percentage methylation (CHH context) |
8.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5674291 |
original top strand |
| CTOT |
6980377 |
complementary to original top strand |
| CTOB |
6938554 |
complementary to original bottom strand |
| OB |
5647087 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
25240309 |
| Unique alignments |
16557255 |
| Duplicates removed |
8683054 |
| Duplicated alignments were found at 3224875 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
96977575 |
| Methylated C's in CpG context |
9515451 |
| Methylated C's in CHG context |
403873 |
| Methylated C's in CHH context |
6284505 |
| Unmethylated C's in CpG context |
2696345 |
| Unmethylated C's in CHG context |
17686365 |
| Unmethylated C's in CHH context |
60391036 |
| Percentage methylation (CpG context) |
77.9% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
9.4% |
|
|
M-Bias Plot
