zr1394_9_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 16557255 lines in total Total number of methylation call strings processed: 16557255 Final Cytosine Methylation Report ================================= Total number of C's analysed: 96977575 Total methylated C's in CpG context: 9515451 Total methylated C's in CHG context: 403873 Total methylated C's in CHH context: 6284505 Total C to T conversions in CpG context: 2696345 Total C to T conversions in CHG context: 17686365 Total C to T conversions in CHH context: 60391036 C methylated in CpG context: 77.9% C methylated in CHG context: 2.2% C methylated in CHH context: 9.4%