zr1394_8_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 8480861 lines in total Total number of methylation call strings processed: 8480861 Final Cytosine Methylation Report ================================= Total number of C's analysed: 51318369 Total methylated C's in CpG context: 6600233 Total methylated C's in CHG context: 246352 Total methylated C's in CHH context: 3250952 Total C to T conversions in CpG context: 1127010 Total C to T conversions in CHG context: 9781878 Total C to T conversions in CHH context: 30311944 C methylated in CpG context: 85.4% C methylated in CHG context: 2.5% C methylated in CHH context: 9.7%