Alignment Stats
| Sequences analysed in total |
49730113 |
| Single-end alignments with a unique best hit |
15378146 |
| Sequences without alignments under any condition |
15119845 |
| Sequences that did not map uniquely |
19232122 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
94177787 |
| Methylated C's in CpG context |
12731776 |
| Methylated C's in CHG context |
439419 |
| Methylated C's in CHH context |
5211666 |
| Methylated C's in Unknown context |
4444 |
| Unmethylated C's in CpG context |
2510434 |
| Unmethylated C's in CHG context |
18674935 |
| Unmethylated C's in CHH context |
54609557 |
| Unmethylated C's in Unknown context |
29264 |
| Percentage methylation (CpG context) |
83.5% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3512207 |
original top strand |
| CTOT |
4205558 |
complementary to original top strand |
| CTOB |
4169989 |
complementary to original bottom strand |
| OB |
3490392 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15378146 |
| Unique alignments |
10691236 |
| Duplicates removed |
4686910 |
| Duplicated alignments were found at 1882201 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
64455591 |
| Methylated C's in CpG context |
7807245 |
| Methylated C's in CHG context |
318516 |
| Methylated C's in CHH context |
4157485 |
| Unmethylated C's in CpG context |
1756856 |
| Unmethylated C's in CHG context |
12199183 |
| Unmethylated C's in CHH context |
38216306 |
| Percentage methylation (CpG context) |
81.6% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
9.8% |
|
|
M-Bias Plot
