Alignment Stats
| Sequences analysed in total |
46455148 |
| Single-end alignments with a unique best hit |
15528129 |
| Sequences without alignments under any condition |
14024669 |
| Sequences that did not map uniquely |
16902350 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
90762894 |
| Methylated C's in CpG context |
9013613 |
| Methylated C's in CHG context |
404127 |
| Methylated C's in CHH context |
5399151 |
| Methylated C's in Unknown context |
3111 |
| Unmethylated C's in CpG context |
2337404 |
| Unmethylated C's in CHG context |
17531974 |
| Unmethylated C's in CHH context |
56076625 |
| Unmethylated C's in Unknown context |
24469 |
| Percentage methylation (CpG context) |
79.4% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3458972 |
original top strand |
| CTOT |
4328400 |
complementary to original top strand |
| CTOB |
4297380 |
complementary to original bottom strand |
| OB |
3443377 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15528129 |
| Unique alignments |
11813169 |
| Duplicates removed |
3714960 |
| Duplicated alignments were found at 1783653 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
68369911 |
| Methylated C's in CpG context |
6268748 |
| Methylated C's in CHG context |
306276 |
| Methylated C's in CHH context |
4421749 |
| Unmethylated C's in CpG context |
1806827 |
| Unmethylated C's in CHG context |
12801677 |
| Unmethylated C's in CHH context |
42764634 |
| Percentage methylation (CpG context) |
77.6% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
9.4% |
|
|
M-Bias Plot
