Alignment Stats
| Sequences analysed in total |
47401736 |
| Single-end alignments with a unique best hit |
15747029 |
| Sequences without alignments under any condition |
14134741 |
| Sequences that did not map uniquely |
17519966 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
93113950 |
| Methylated C's in CpG context |
9933157 |
| Methylated C's in CHG context |
400913 |
| Methylated C's in CHH context |
5646633 |
| Methylated C's in Unknown context |
3851 |
| Unmethylated C's in CpG context |
3086035 |
| Unmethylated C's in CHG context |
18513739 |
| Unmethylated C's in CHH context |
55533473 |
| Unmethylated C's in Unknown context |
25960 |
| Percentage methylation (CpG context) |
76.3% |
| Percentage methylation (CHG context) |
2.1% |
| Percentage methylation (CHH context) |
9.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3575045 |
original top strand |
| CTOT |
4329383 |
complementary to original top strand |
| CTOB |
4286298 |
complementary to original bottom strand |
| OB |
3556303 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15747029 |
| Unique alignments |
11776287 |
| Duplicates removed |
3970742 |
| Duplicated alignments were found at 1836778 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
68921607 |
| Methylated C's in CpG context |
6669103 |
| Methylated C's in CHG context |
306607 |
| Methylated C's in CHH context |
4610637 |
| Unmethylated C's in CpG context |
2370609 |
| Unmethylated C's in CHG context |
13169917 |
| Unmethylated C's in CHH context |
41794734 |
| Percentage methylation (CpG context) |
73.8% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
9.9% |
|
|
M-Bias Plot
