zr1394_4_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 9514726 lines in total Total number of methylation call strings processed: 9514726 Final Cytosine Methylation Report ================================= Total number of C's analysed: 57380051 Total methylated C's in CpG context: 7093417 Total methylated C's in CHG context: 290465 Total methylated C's in CHH context: 3757271 Total C to T conversions in CpG context: 1317260 Total C to T conversions in CHG context: 10875988 Total C to T conversions in CHH context: 34045650 C methylated in CpG context: 84.3% C methylated in CHG context: 2.6% C methylated in CHH context: 9.9%