zr1394_3_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 10432199 lines in total Total number of methylation call strings processed: 10432199 Final Cytosine Methylation Report ================================= Total number of C's analysed: 62129400 Total methylated C's in CpG context: 7053744 Total methylated C's in CHG context: 296595 Total methylated C's in CHH context: 4106276 Total C to T conversions in CpG context: 1706032 Total C to T conversions in CHG context: 11393779 Total C to T conversions in CHH context: 37572974 C methylated in CpG context: 80.5% C methylated in CHG context: 2.5% C methylated in CHH context: 9.9%