zr1394_16_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 11846029 lines in total Total number of methylation call strings processed: 11846029 Final Cytosine Methylation Report ================================= Total number of C's analysed: 72753637 Total methylated C's in CpG context: 9949262 Total methylated C's in CHG context: 384933 Total methylated C's in CHH context: 5094149 Total C to T conversions in CpG context: 2085838 Total C to T conversions in CHG context: 13053209 Total C to T conversions in CHH context: 42186246 C methylated in CpG context: 82.7% C methylated in CHG context: 2.9% C methylated in CHH context: 10.8%