Alignment Stats
| Sequences analysed in total |
67984205 |
| Single-end alignments with a unique best hit |
19910397 |
| Sequences without alignments under any condition |
20663417 |
| Sequences that did not map uniquely |
27410391 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
126130939 |
| Methylated C's in CpG context |
21339729 |
| Methylated C's in CHG context |
602762 |
| Methylated C's in CHH context |
6674685 |
| Methylated C's in Unknown context |
6246 |
| Unmethylated C's in CpG context |
3060010 |
| Unmethylated C's in CHG context |
25313525 |
| Unmethylated C's in CHH context |
69140228 |
| Unmethylated C's in Unknown context |
42456 |
| Percentage methylation (CpG context) |
87.5% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4492226 |
original top strand |
| CTOT |
5501159 |
complementary to original top strand |
| CTOB |
5454229 |
complementary to original bottom strand |
| OB |
4462783 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19910397 |
| Unique alignments |
10728788 |
| Duplicates removed |
9181609 |
| Duplicated alignments were found at 2576549 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
66291550 |
| Methylated C's in CpG context |
9369352 |
| Methylated C's in CHG context |
360980 |
| Methylated C's in CHH context |
4662164 |
| Unmethylated C's in CpG context |
1667423 |
| Unmethylated C's in CHG context |
12247476 |
| Unmethylated C's in CHH context |
37984155 |
| Percentage methylation (CpG context) |
84.9% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
10.9% |
|
|
M-Bias Plot
