zr1394_14_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 14328882 lines in total Total number of methylation call strings processed: 14328882 Final Cytosine Methylation Report ================================= Total number of C's analysed: 87103963 Total methylated C's in CpG context: 11148831 Total methylated C's in CHG context: 439594 Total methylated C's in CHH context: 5924738 Total C to T conversions in CpG context: 2386168 Total C to T conversions in CHG context: 15349838 Total C to T conversions in CHH context: 51854794 C methylated in CpG context: 82.4% C methylated in CHG context: 2.8% C methylated in CHH context: 10.3%