Alignment Stats
| Sequences analysed in total |
54458572 |
| Single-end alignments with a unique best hit |
15624995 |
| Sequences without alignments under any condition |
16588302 |
| Sequences that did not map uniquely |
22245275 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
100017389 |
| Methylated C's in CpG context |
17631307 |
| Methylated C's in CHG context |
489793 |
| Methylated C's in CHH context |
5187559 |
| Methylated C's in Unknown context |
4922 |
| Unmethylated C's in CpG context |
2899970 |
| Unmethylated C's in CHG context |
19768605 |
| Unmethylated C's in CHH context |
54040155 |
| Unmethylated C's in Unknown context |
34485 |
| Percentage methylation (CpG context) |
85.9% |
| Percentage methylation (CHG context) |
2.4% |
| Percentage methylation (CHH context) |
8.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3520857 |
original top strand |
| CTOT |
4325599 |
complementary to original top strand |
| CTOB |
4288436 |
complementary to original bottom strand |
| OB |
3490103 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15624995 |
| Unique alignments |
8127256 |
| Duplicates removed |
7497739 |
| Duplicated alignments were found at 1897754 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
50434695 |
| Methylated C's in CpG context |
7064178 |
| Methylated C's in CHG context |
278667 |
| Methylated C's in CHH context |
3575067 |
| Unmethylated C's in CpG context |
1611371 |
| Unmethylated C's in CHG context |
9128258 |
| Unmethylated C's in CHH context |
28777154 |
| Percentage methylation (CpG context) |
81.4% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
11.1% |
|
|
M-Bias Plot
