File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr1394_10_s456_trimmed_bismark_bt2.bam	78221457	25374001	21899233	30948223	0	16495646	8878355	54346071	6587591	1552509	290156	10190620	4259112	31466083
zr1394_11_s456_trimmed_bismark_bt2.bam	54458572	15624995	16588302	22245275	0	7497739	8127256	50434695	7064178	1611371	278667	9128258	3575067	28777154
zr1394_12_s456_trimmed_bismark_bt2.bam	59459431	20027643	17427831	22003956	1	6465802	13561841	80149813	8313907	2330165	333592	15191561	5271016	48709572
zr1394_13_s456_trimmed_bismark_bt2.bam	64352550	19626793	18775282	25950475	0	8468769	11158024	68398224	9042404	1816241	342660	12804713	4601823	39790383
zr1394_14_s456_trimmed_bismark_bt2.bam	87834637	25416779	26593175	35824683	0	11087897	14328882	87103963	11148831	2386168	439594	15349838	5924738	51854794
zr1394_15_s456_trimmed_bismark_bt2.bam	67984205	19910397	20663417	27410391	0	9181609	10728788	66291550	9369352	1667423	360980	12247476	4662164	37984155
zr1394_16_s456_trimmed_bismark_bt2.bam	74531056	21286992	22899250	30344813	1	9440963	11846029	72753637	9949262	2085838	384933	13053209	5094149	42186246
zr1394_17_s456_trimmed_bismark_bt2.bam	42070546	12831686	12357075	16881785	0	5035157	7796529	47781647	6612578	1191663	249661	9371177	3301612	27054956
zr1394_18_s456_trimmed_bismark_bt2.bam	55048106	18068736	15701339	21278031	0	6050893	12017843	71613889	8130684	1878504	313418	13868882	4538975	42883426
zr1394_1_s456_trimmed_bismark_bt2.bam	46792286	14534759	14155170	18102356	1	4339435	10195324	61108365	7206035	1781863	301119	11485875	3975802	36357671
zr1394_2_s456_trimmed_bismark_bt2.bam	46105140	14822810	14100920	17181410	0	4550192	10272618	61305714	7074055	1645137	296036	11724386	4093092	36473008
zr1394_3_s456_trimmed_bismark_bt2.bam	48376729	14759690	14949228	18667811	0	4327491	10432199	62129400	7053744	1706032	296595	11393779	4106276	37572974
zr1394_4_s456_trimmed_bismark_bt2.bam	44905078	13872301	13715942	17316835	0	4357575	9514726	57380051	7093417	1317260	290465	10875988	3757271	34045650
zr1394_5_s456_trimmed_bismark_bt2.bam	47401736	15747029	14134741	17519966	0	3970742	11776287	68921607	6669103	2370609	306607	13169917	4610637	41794734
zr1394_6_s456_trimmed_bismark_bt2.bam	46455148	15528129	14024669	16902350	0	3714960	11813169	68369911	6268748	1806827	306276	12801677	4421749	42764634
zr1394_7_s456_trimmed_bismark_bt2.bam	49730113	15378146	15119845	19232122	0	4686910	10691236	64455591	7807245	1756856	318516	12199183	4157485	38216306
zr1394_8_s456_trimmed_bismark_bt2.bam	38697189	12035925	11580098	15081166	0	3555064	8480861	51318369	6600233	1127010	246352	9781878	3250952	30311944
zr1394_9_s456_trimmed_bismark_bt2.bam	77350922	25240309	22010659	30099953	1	8683054	16557255	96977575	9515451	2696345	403873	17686365	6284505	60391036
zr1394_all_s456_trimmed_bismark_bt2.bam	605809374	184983538	179447426	241378407	3	124135383	60848155	362887673	37503474	11075480	2098223	61396504	31599525	219214467