[2021-07-02 13:32:17,018] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-07-02 13:32:17,018] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/sr320/.multiqc_config.yaml [2021-07-02 13:32:17,019] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-07-02 13:32:17,019] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-07-02 13:32:22,310] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-07-02 13:32:22,310] multiqc [INFO ] This is MultiQC v1.8 [2021-07-02 13:32:22,347] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2021-07-02 13:32:22,347] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/sr320/070221-olydir [2021-07-02 13:32:22,347] multiqc [INFO ] Template : default [2021-07-02 13:32:22,347] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-07-02 13:32:22,348] multiqc [INFO ] Searching : /gscratch/scrubbed/sr320/070221-olydir [2021-07-02 13:32:22,348] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-07-02 13:32:22,349] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpk6qj5qmj [2021-07-02 13:32:23,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam [2021-07-02 13:32:23,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:23,167] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:23,321] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_fastqc.html [2021-07-02 13:32:23,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_fastqc.html [2021-07-02 13:32:23,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:23,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:23,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:23,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:23,493] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:23,493] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:23,493] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:23,493] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:23,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:24,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_fastqc.html [2021-07-02 13:32:24,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam [2021-07-02 13:32:24,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:24,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:24,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-07-02 13:32:24,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-07-02 13:32:24,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:24,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:24,444] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:24,444] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:24,444] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:24,444] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:24,473] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:25,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:25,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:25,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:25,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:25,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam [2021-07-02 13:32:25,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_fastqc.html [2021-07-02 13:32:25,863] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:25,864] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:25,864] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:25,864] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:25,864] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:25,864] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:25,877] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:26,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:26,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:26,702] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:26,702] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:26,702] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:26,702] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:26,716] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:27,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-07-02 13:32:27,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-07-02 13:32:27,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:27,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:27,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:27,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:27,690] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:27,690] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:27,690] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:27,690] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:27,704] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:28,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-07-02 13:32:28,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam [2021-07-02 13:32:28,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:28,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:28,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam [2021-07-02 13:32:28,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:28,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:28,696] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:28,696] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:28,696] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:28,696] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:28,712] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:29,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:29,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:29,717] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:29,717] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:29,717] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:29,717] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:29,731] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 3_TTAGGC_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:30,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-07-02 13:32:30,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam [2021-07-02 13:32:30,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:30,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:30,589] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:30,589] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:30,589] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:30,589] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:30,602] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:31,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam [2021-07-02 13:32:31,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:31,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:31,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam [2021-07-02 13:32:31,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_fastqc.html [2021-07-02 13:32:31,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: bismark_summary_report.html [2021-07-02 13:32:31,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:31,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:31,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:31,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:31,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:31,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:31,566] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:32,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-07-02 13:32:32,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-07-02 13:32:32,532] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-07-02 13:32:32,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:32,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 2_CGATGT_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:32,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:32,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:32,805] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:32,805] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:32,805] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:32,805] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:32,829] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 4_TGACCA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:33,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:33,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:33,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:33,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:34,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:34,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:34,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam [2021-07-02 13:32:34,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-07-02 13:32:34,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-07-02 13:32:34,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:34,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_10x.tab [2021-07-02 13:32:34,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam.bai [2021-07-02 13:32:34,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:34,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:34,256] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:34,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:34,257] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:34,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:34,278] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:35,617] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_fastqc.html [2021-07-02 13:32:35,617] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam.bai [2021-07-02 13:32:35,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:35,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:35,707] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-07-02 13:32:35,777] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:35,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:35,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:35,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:35,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:35,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:35,803] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 6_GCCAAT_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:36,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam [2021-07-02 13:32:36,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_fastqc.html [2021-07-02 13:32:36,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam [2021-07-02 13:32:36,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:36,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:36,768] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:36,768] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:36,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:36,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:36,789] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:38,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-07-02 13:32:38,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam.bai [2021-07-02 13:32:38,068] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_bismark_bt2_SE_report.html [2021-07-02 13:32:38,068] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_fastqc.html [2021-07-02 13:32:38,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam [2021-07-02 13:32:38,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam.bai [2021-07-02 13:32:38,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam.bai [2021-07-02 13:32:38,127] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam.bai [2021-07-02 13:32:38,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: job.sh [2021-07-02 13:32:38,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:38,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:38,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:38,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:38,258] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:38,258] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:38,277] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 7_CAGATC_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:38,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-07-02 13:32:38,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam [2021-07-02 13:32:38,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam.bai [2021-07-02 13:32:39,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:39,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 5_ACAGTG_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:39,127] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam [2021-07-02 13:32:39,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:39,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:39,141] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:39,141] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:39,141] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:39,141] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.bedgraph [2021-07-02 13:32:39,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam [2021-07-02 13:32:39,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam [2021-07-02 13:32:39,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam [2021-07-02 13:32:39,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:39,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:39,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:39,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:39,770] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:39,770] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 1_ATCACG_L001_R1_001_trimmed_5x.tab [2021-07-02 13:32:40,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.sorted.bam.bai [2021-07-02 13:32:40,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:40,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8_ACTTGA_L001_R1_001_trimmed_10x.bedgraph [2021-07-02 13:32:40,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: combined_fastqc.html [2021-07-02 13:32:48,367] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-07-02 13:32:48,388] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-07-02 13:32:48,405] multiqc [DEBUG ] No samples found: custom_content [2021-07-02 13:32:48,507] multiqc [DEBUG ] No samples found: conpair [2021-07-02 13:32:48,604] multiqc [DEBUG ] No samples found: peddy [2021-07-02 13:32:48,683] multiqc [DEBUG ] No samples found: methylQA [2021-07-02 13:32:48,707] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-07-02 13:32:48,871] multiqc [DEBUG ] No samples found: qualimap [2021-07-02 13:32:48,926] multiqc [DEBUG ] No samples found: preseq [2021-07-02 13:32:48,977] multiqc [DEBUG ] No samples found: quast [2021-07-02 13:32:49,048] multiqc [DEBUG ] No samples found: qorts [2021-07-02 13:32:49,167] multiqc [DEBUG ] No samples found: rna_seqc [2021-07-02 13:32:49,333] multiqc [DEBUG ] No samples found: rsem [2021-07-02 13:32:49,478] multiqc [DEBUG ] No samples found: rseqc [2021-07-02 13:32:49,524] multiqc [DEBUG ] No samples found: busco [2021-07-02 13:32:49,635] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-07-02 13:32:49,666] multiqc [DEBUG ] No samples found: disambiguate [2021-07-02 13:32:49,700] multiqc [DEBUG ] No samples found: supernova [2021-07-02 13:32:49,872] multiqc [DEBUG ] No samples found: deeptools [2021-07-02 13:32:49,973] multiqc [DEBUG ] No samples found: sargasso [2021-07-02 13:32:50,049] multiqc [DEBUG ] No samples found: verifybamid [2021-07-02 13:32:50,082] multiqc [DEBUG ] No samples found: mirtrace [2021-07-02 13:32:50,108] multiqc [DEBUG ] No samples found: happy [2021-07-02 13:32:50,146] multiqc [DEBUG ] No samples found: homer [2021-07-02 13:32:50,165] multiqc [DEBUG ] No samples found: macs2 [2021-07-02 13:32:50,174] multiqc [DEBUG ] No samples found: theta2 [2021-07-02 13:32:50,207] multiqc [DEBUG ] No samples found: snpeff [2021-07-02 13:32:50,293] multiqc [DEBUG ] No samples found: gatk [2021-07-02 13:32:50,303] multiqc [DEBUG ] No samples found: htseq [2021-07-02 13:32:50,381] multiqc [DEBUG ] No samples found: bcftools [2021-07-02 13:32:50,392] multiqc [DEBUG ] No samples found: featureCounts [2021-07-02 13:32:50,404] multiqc [DEBUG ] No samples found: fgbio [2021-07-02 13:32:50,413] multiqc [DEBUG ] No samples found: dedup [2021-07-02 13:32:50,442] multiqc [DEBUG ] No samples found: damageprofiler [2021-07-02 13:32:50,741] multiqc [DEBUG ] No samples found: biobambam2 [2021-07-02 13:32:50,766] multiqc [DEBUG ] No samples found: mtnucratio [2021-07-02 13:32:50,770] multiqc [DEBUG ] No samples found: picard [2021-07-02 13:32:50,792] multiqc [DEBUG ] No samples found: prokka [2021-07-02 13:32:50,801] multiqc [DEBUG ] No samples found: samblaster [2021-07-02 13:32:50,942] multiqc [DEBUG ] No samples found: samtools [2021-07-02 13:32:50,971] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-07-02 13:32:51,017] multiqc [DEBUG ] No samples found: bamtools [2021-07-02 13:32:51,025] multiqc [DEBUG ] No samples found: jellyfish [2021-07-02 13:32:51,055] multiqc [DEBUG ] No samples found: vcftools [2021-07-02 13:32:51,088] multiqc [DEBUG ] No samples found: longranger [2021-07-02 13:32:51,127] multiqc [DEBUG ] No samples found: stacks [2021-07-02 13:32:51,234] multiqc [DEBUG ] No samples found: bbmap [2021-07-02 13:32:51,281] multiqc.modules.bismark.bismark [INFO ] Found 8 bismark alignment reports [2021-07-02 13:32:51,285] multiqc.modules.bismark.bismark [INFO ] Found 8 bismark dedup reports [2021-07-02 13:32:51,291] multiqc.modules.bismark.bismark [INFO ] Found 8 bismark methextract reports [2021-07-02 13:32:51,327] multiqc [DEBUG ] No samples found: biscuit [2021-07-02 13:32:51,359] multiqc [DEBUG ] No samples found: hicexplorer [2021-07-02 13:32:51,391] multiqc [DEBUG ] No samples found: hicup [2021-07-02 13:32:51,489] multiqc [DEBUG ] No samples found: hicpro [2021-07-02 13:32:51,499] multiqc [DEBUG ] No samples found: salmon [2021-07-02 13:32:51,546] multiqc [DEBUG ] No samples found: kallisto [2021-07-02 13:32:51,596] multiqc [DEBUG ] No samples found: slamdunk [2021-07-02 13:32:51,653] multiqc [DEBUG ] No samples found: star [2021-07-02 13:32:51,720] multiqc [DEBUG ] No samples found: hisat2 [2021-07-02 13:32:51,742] multiqc [DEBUG ] No samples found: tophat [2021-07-02 13:32:51,773] multiqc [DEBUG ] No samples found: bowtie2 [2021-07-02 13:32:51,790] multiqc [DEBUG ] No samples found: bowtie1 [2021-07-02 13:32:51,799] multiqc [DEBUG ] No samples found: kat [2021-07-02 13:32:51,808] multiqc [DEBUG ] No samples found: leehom [2021-07-02 13:32:51,919] multiqc [DEBUG ] No samples found: adapterRemoval [2021-07-02 13:32:51,930] multiqc [DEBUG ] No samples found: clipandmerge [2021-07-02 13:32:52,001] multiqc [DEBUG ] No samples found: cutadapt [2021-07-02 13:32:52,012] multiqc [DEBUG ] No samples found: flexbar [2021-07-02 13:32:52,027] multiqc [DEBUG ] No samples found: trimmomatic [2021-07-02 13:32:52,053] multiqc [DEBUG ] No samples found: skewer [2021-07-02 13:32:52,062] multiqc [DEBUG ] No samples found: sortmerna [2021-07-02 13:32:52,102] multiqc [DEBUG ] No samples found: biobloomtools [2021-07-02 13:32:52,147] multiqc [DEBUG ] No samples found: fastq_screen [2021-07-02 13:32:52,186] multiqc [DEBUG ] No samples found: afterqc [2021-07-02 13:32:52,219] multiqc [DEBUG ] No samples found: fastp [2021-07-02 13:32:53,261] multiqc.modules.fastqc.fastqc [INFO ] Found 9 reports [2021-07-02 13:32:53,455] multiqc [DEBUG ] No samples found: minionqc [2021-07-02 13:32:53,477] multiqc [DEBUG ] No samples found: mosdepth [2021-07-02 13:32:53,500] multiqc [DEBUG ] No samples found: clusterflow [2021-07-02 13:32:53,563] multiqc [DEBUG ] No samples found: bcl2fastq [2021-07-02 13:32:53,626] multiqc [DEBUG ] No samples found: interop [2021-07-02 13:32:53,657] multiqc [DEBUG ] No samples found: flash [2021-07-02 13:32:53,694] multiqc [DEBUG ] No samples found: seqyclean [2021-07-02 13:32:53,746] multiqc [INFO ] Compressing plot data [2021-07-02 13:32:53,924] multiqc [INFO ] Report : multiqc_report.html [2021-07-02 13:32:53,924] multiqc [INFO ] Data : multiqc_data [2021-07-02 13:32:53,925] multiqc [DEBUG ] Moving data file from '/tmp/tmpk6qj5qmj/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/sr320/070221-olydir/multiqc_data' [2021-07-02 13:32:53,926] multiqc [DEBUG ] Moving data file from '/tmp/tmpk6qj5qmj/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/sr320/070221-olydir/multiqc_data' [2021-07-02 13:32:53,927] multiqc [DEBUG ] Moving data file from '/tmp/tmpk6qj5qmj/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/sr320/070221-olydir/multiqc_data' [2021-07-02 13:32:53,928] multiqc [DEBUG ] Moving data file from '/tmp/tmpk6qj5qmj/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/sr320/070221-olydir/multiqc_data' [2021-07-02 13:32:53,929] multiqc [DEBUG ] Moving data file from '/tmp/tmpk6qj5qmj/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/sr320/070221-olydir/multiqc_data' [2021-07-02 13:32:53,930] multiqc [DEBUG ] Moving data file from '/tmp/tmpk6qj5qmj/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/sr320/070221-olydir/multiqc_data' [2021-07-02 13:32:53,931] multiqc [DEBUG ] Moving data file from '/tmp/tmpk6qj5qmj/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/sr320/070221-olydir/multiqc_data' [2021-07-02 13:32:53,932] multiqc [DEBUG ] Moving data file from '/tmp/tmpk6qj5qmj/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/sr320/070221-olydir/multiqc_data' [2021-07-02 13:32:55,350] multiqc [INFO ] MultiQC complete