File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam	9246318	4063697	1179217	3999588	3816	496332	3567365	19257520	739459	2050571	36852	3746639	166608	12517391
2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam	11654467	5090947	1488195	5070690	4635	685287	4405660	23808752	890995	2529106	83304	4559099	372107	15374141
3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam	11555321	5086098	1486768	4977861	4594	728408	4357690	23490464	898799	2496282	41098	4576943	185348	15291994
4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam	11408856	5027880	1433341	4942950	4685	636300	4391580	23572884	920224	2474902	41289	4564383	194717	15377369
5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam	12231319	5357077	1580596	5288547	5099	763105	4593972	24788653	925261	2665822	52497	4827653	231354	16086066
6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam	12175584	5278181	1645371	5247177	4855	718808	4559373	24571154	889762	2662328	68974	4740224	316202	15893664
7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam	10113854	4405041	1304913	4399909	3991	493146	3911895	21041768	777012	2260229	34534	4089010	160956	13720027
8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam	13949213	6071006	1810974	6061409	5824	856367	5214639	28169285	966984	3106620	60729	5461621	288912	18284419