Alignment Stats
| Sequences analysed in total |
13949213 |
| Single-end alignments with a unique best hit |
6076830 |
| Sequences without alignments under any condition |
1810974 |
| Sequences that did not map uniquely |
6061409 |
| Genomic sequence context not extractable (edges of chromosomes) |
5824 |
|
|
Cytosine Methylation
| Total C's analysed |
32761745 |
| Methylated C's in CpG context |
1157034 |
| Methylated C's in CHG context |
73009 |
| Methylated C's in CHH context |
337279 |
| Methylated C's in Unknown context |
5050 |
| Unmethylated C's in CpG context |
3716117 |
| Unmethylated C's in CHG context |
6485444 |
| Unmethylated C's in CHH context |
20992862 |
| Unmethylated C's in Unknown context |
81686 |
| Percentage methylation (CpG context) |
23.7% |
| Percentage methylation (CHG context) |
1.1% |
| Percentage methylation (CHH context) |
1.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3039408 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
3031598 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
6071006 |
| Unique alignments |
5214639 |
| Duplicates removed |
856367 |
| Duplicated alignments were found at 501309 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
28169285 |
| Methylated C's in CpG context |
966984 |
| Methylated C's in CHG context |
60729 |
| Methylated C's in CHH context |
288912 |
| Unmethylated C's in CpG context |
3106620 |
| Unmethylated C's in CHG context |
5461621 |
| Unmethylated C's in CHH context |
18284419 |
| Percentage methylation (CpG context) |
23.7% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
