Alignment Stats
| Sequences analysed in total |
10113854 |
| Single-end alignments with a unique best hit |
4409032 |
| Sequences without alignments under any condition |
1304913 |
| Sequences that did not map uniquely |
4399909 |
| Genomic sequence context not extractable (edges of chromosomes) |
3991 |
|
|
Cytosine Methylation
| Total C's analysed |
23601212 |
| Methylated C's in CpG context |
902662 |
| Methylated C's in CHG context |
39892 |
| Methylated C's in CHH context |
183434 |
| Methylated C's in Unknown context |
2936 |
| Unmethylated C's in CpG context |
2547688 |
| Unmethylated C's in CHG context |
4669084 |
| Unmethylated C's in CHH context |
15258452 |
| Unmethylated C's in Unknown context |
56865 |
| Percentage methylation (CpG context) |
26.2% |
| Percentage methylation (CHG context) |
0.8% |
| Percentage methylation (CHH context) |
1.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2205964 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2199077 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
4405041 |
| Unique alignments |
3911895 |
| Duplicates removed |
493146 |
| Duplicated alignments were found at 308035 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
21041768 |
| Methylated C's in CpG context |
777012 |
| Methylated C's in CHG context |
34534 |
| Methylated C's in CHH context |
160956 |
| Unmethylated C's in CpG context |
2260229 |
| Unmethylated C's in CHG context |
4089010 |
| Unmethylated C's in CHH context |
13720027 |
| Percentage methylation (CpG context) |
25.6% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
