7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: single-end (SAM format) Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 3911895 lines in total Total number of methylation call strings processed: 3911895 Final Cytosine Methylation Report ================================= Total number of C's analysed: 21041768 Total methylated C's in CpG context: 777012 Total methylated C's in CHG context: 34534 Total methylated C's in CHH context: 160956 Total C to T conversions in CpG context: 2260229 Total C to T conversions in CHG context: 4089010 Total C to T conversions in CHH context: 13720027 C methylated in CpG context: 25.6% C methylated in non-CpG context: 1.1%