Alignment Stats
| Sequences analysed in total |
12175584 |
| Single-end alignments with a unique best hit |
5283036 |
| Sequences without alignments under any condition |
1645371 |
| Sequences that did not map uniquely |
5247177 |
| Genomic sequence context not extractable (edges of chromosomes) |
4855 |
|
|
Cytosine Methylation
| Total C's analysed |
28456278 |
| Methylated C's in CpG context |
1059882 |
| Methylated C's in CHG context |
82650 |
| Methylated C's in CHH context |
366373 |
| Methylated C's in Unknown context |
4344 |
| Unmethylated C's in CpG context |
3213576 |
| Unmethylated C's in CHG context |
5596516 |
| Unmethylated C's in CHH context |
18137281 |
| Unmethylated C's in Unknown context |
72858 |
| Percentage methylation (CpG context) |
24.8% |
| Percentage methylation (CHG context) |
1.5% |
| Percentage methylation (CHH context) |
2.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2637183 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2640998 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
5278181 |
| Unique alignments |
4559373 |
| Duplicates removed |
718808 |
| Duplicated alignments were found at 396795 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
24571154 |
| Methylated C's in CpG context |
889762 |
| Methylated C's in CHG context |
68974 |
| Methylated C's in CHH context |
316202 |
| Unmethylated C's in CpG context |
2662328 |
| Unmethylated C's in CHG context |
4740224 |
| Unmethylated C's in CHH context |
15893664 |
| Percentage methylation (CpG context) |
25.0% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
