Alignment Stats
| Sequences analysed in total |
12231319 |
| Single-end alignments with a unique best hit |
5362176 |
| Sequences without alignments under any condition |
1580596 |
| Sequences that did not map uniquely |
5288547 |
| Genomic sequence context not extractable (edges of chromosomes) |
5099 |
|
|
Cytosine Methylation
| Total C's analysed |
28880897 |
| Methylated C's in CpG context |
1107017 |
| Methylated C's in CHG context |
63558 |
| Methylated C's in CHH context |
270074 |
| Methylated C's in Unknown context |
3973 |
| Unmethylated C's in CpG context |
3245245 |
| Unmethylated C's in CHG context |
5740229 |
| Unmethylated C's in CHH context |
18454774 |
| Unmethylated C's in Unknown context |
73414 |
| Percentage methylation (CpG context) |
25.4% |
| Percentage methylation (CHG context) |
1.1% |
| Percentage methylation (CHH context) |
1.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2683369 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2673708 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
5357077 |
| Unique alignments |
4593972 |
| Duplicates removed |
763105 |
| Duplicated alignments were found at 414884 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
24788653 |
| Methylated C's in CpG context |
925261 |
| Methylated C's in CHG context |
52497 |
| Methylated C's in CHH context |
231354 |
| Unmethylated C's in CpG context |
2665822 |
| Unmethylated C's in CHG context |
4827653 |
| Unmethylated C's in CHH context |
16086066 |
| Percentage methylation (CpG context) |
25.8% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
