Alignment Stats
Sequences analysed in total |
11408856 |
Single-end alignments with a unique best hit |
5032565 |
Sequences without alignments under any condition |
1433341 |
Sequences that did not map uniquely |
4942950 |
Genomic sequence context not extractable (edges of chromosomes) |
4685 |
|
|
Cytosine Methylation
Total C's analysed |
26935252 |
Methylated C's in CpG context |
1072508 |
Methylated C's in CHG context |
49594 |
Methylated C's in CHH context |
229961 |
Methylated C's in Unknown context |
3738 |
Unmethylated C's in CpG context |
2908879 |
Unmethylated C's in CHG context |
5301050 |
Unmethylated C's in CHH context |
17373260 |
Unmethylated C's in Unknown context |
66047 |
Percentage methylation (CpG context) |
26.9% |
Percentage methylation (CHG context) |
0.9% |
Percentage methylation (CHH context) |
1.3% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
2517228 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
2510652 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
5027880 |
Unique alignments |
4391580 |
Duplicates removed |
636300 |
Duplicated alignments were found at 381714 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
23572884 |
Methylated C's in CpG context |
920224 |
Methylated C's in CHG context |
41289 |
Methylated C's in CHH context |
194717 |
Unmethylated C's in CpG context |
2474902 |
Unmethylated C's in CHG context |
4564383 |
Unmethylated C's in CHH context |
15377369 |
Percentage methylation (CpG context) |
27.1% |
Percentage methylation (CHG context) |
N/A% |
Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot