4_TGACCA_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: single-end (SAM format) Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 4391580 lines in total Total number of methylation call strings processed: 4391580 Final Cytosine Methylation Report ================================= Total number of C's analysed: 23572884 Total methylated C's in CpG context: 920224 Total methylated C's in CHG context: 41289 Total methylated C's in CHH context: 194717 Total C to T conversions in CpG context: 2474902 Total C to T conversions in CHG context: 4564383 Total C to T conversions in CHH context: 15377369 C methylated in CpG context: 27.1% C methylated in non-CpG context: 1.2%