Alignment Stats
| Sequences analysed in total |
11555321 |
| Single-end alignments with a unique best hit |
5090692 |
| Sequences without alignments under any condition |
1486768 |
| Sequences that did not map uniquely |
4977861 |
| Genomic sequence context not extractable (edges of chromosomes) |
4594 |
|
|
Cytosine Methylation
| Total C's analysed |
27529174 |
| Methylated C's in CpG context |
1070205 |
| Methylated C's in CHG context |
62804 |
| Methylated C's in CHH context |
261548 |
| Methylated C's in Unknown context |
4043 |
| Unmethylated C's in CpG context |
3122098 |
| Unmethylated C's in CHG context |
5441541 |
| Unmethylated C's in CHH context |
17570978 |
| Unmethylated C's in Unknown context |
69965 |
| Percentage methylation (CpG context) |
25.5% |
| Percentage methylation (CHG context) |
1.1% |
| Percentage methylation (CHH context) |
1.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2552558 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2533540 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
5086098 |
| Unique alignments |
4357690 |
| Duplicates removed |
728408 |
| Duplicated alignments were found at 371562 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
23490464 |
| Methylated C's in CpG context |
898799 |
| Methylated C's in CHG context |
41098 |
| Methylated C's in CHH context |
185348 |
| Unmethylated C's in CpG context |
2496282 |
| Unmethylated C's in CHG context |
4576943 |
| Unmethylated C's in CHH context |
15291994 |
| Percentage methylation (CpG context) |
26.5% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
