Alignment Stats
Sequences analysed in total |
11654467 |
Single-end alignments with a unique best hit |
5095582 |
Sequences without alignments under any condition |
1488195 |
Sequences that did not map uniquely |
5070690 |
Genomic sequence context not extractable (edges of chromosomes) |
4635 |
|
|
Cytosine Methylation
Total C's analysed |
27480056 |
Methylated C's in CpG context |
1053319 |
Methylated C's in CHG context |
99856 |
Methylated C's in CHH context |
434623 |
Methylated C's in Unknown context |
4424 |
Unmethylated C's in CpG context |
3002656 |
Unmethylated C's in CHG context |
5357714 |
Unmethylated C's in CHH context |
17531888 |
Unmethylated C's in Unknown context |
66894 |
Percentage methylation (CpG context) |
26.0% |
Percentage methylation (CHG context) |
1.8% |
Percentage methylation (CHH context) |
2.4% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
2548767 |
original top strand |
CTOT |
0 |
complementary to original top strand |
CTOB |
0 |
complementary to original bottom strand |
OB |
2542180 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
5090947 |
Unique alignments |
4405660 |
Duplicates removed |
685287 |
Duplicated alignments were found at 403647 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
23808752 |
Methylated C's in CpG context |
890995 |
Methylated C's in CHG context |
83304 |
Methylated C's in CHH context |
372107 |
Unmethylated C's in CpG context |
2529106 |
Unmethylated C's in CHG context |
4559099 |
Unmethylated C's in CHH context |
15374141 |
Percentage methylation (CpG context) |
26.1% |
Percentage methylation (CHG context) |
N/A% |
Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot