Total number of alignments analysed in 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam: 5090947 Total number duplicated alignments removed: 685287 (13.46%) Duplicated alignments were found at: 403647 different position(s) Total count of deduplicated leftover sequences: 4405660 (86.54% of total)