Alignment Stats
| Sequences analysed in total |
9246318 |
| Single-end alignments with a unique best hit |
4067513 |
| Sequences without alignments under any condition |
1179217 |
| Sequences that did not map uniquely |
3999588 |
| Genomic sequence context not extractable (edges of chromosomes) |
3816 |
|
|
Cytosine Methylation
| Total C's analysed |
21885255 |
| Methylated C's in CpG context |
866566 |
| Methylated C's in CHG context |
50314 |
| Methylated C's in CHH context |
214171 |
| Methylated C's in Unknown context |
3116 |
| Unmethylated C's in CpG context |
2383138 |
| Unmethylated C's in CHG context |
4326724 |
| Unmethylated C's in CHH context |
14044342 |
| Unmethylated C's in Unknown context |
53884 |
| Percentage methylation (CpG context) |
26.7% |
| Percentage methylation (CHG context) |
1.1% |
| Percentage methylation (CHH context) |
1.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2034763 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2028934 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
4063697 |
| Unique alignments |
3567365 |
| Duplicates removed |
496332 |
| Duplicated alignments were found at 291435 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
19257520 |
| Methylated C's in CpG context |
739459 |
| Methylated C's in CHG context |
36852 |
| Methylated C's in CHH context |
166608 |
| Unmethylated C's in CpG context |
2050571 |
| Unmethylated C's in CHG context |
3746639 |
| Unmethylated C's in CHH context |
12517391 |
| Percentage methylation (CpG context) |
26.5% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
