Alignment Stats
| Sequences analysed in total |
38697189 |
| Single-end alignments with a unique best hit |
12035925 |
| Sequences without alignments under any condition |
11580098 |
| Sequences that did not map uniquely |
15081166 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
73932964 |
| Methylated C's in CpG context |
10514623 |
| Methylated C's in CHG context |
336033 |
| Methylated C's in CHH context |
4067854 |
| Methylated C's in Unknown context |
3281 |
| Unmethylated C's in CpG context |
1610852 |
| Unmethylated C's in CHG context |
14707547 |
| Unmethylated C's in CHH context |
42696055 |
| Unmethylated C's in Unknown context |
21955 |
| Percentage methylation (CpG context) |
86.7% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2668893 |
original top strand |
| CTOT |
3365800 |
complementary to original top strand |
| CTOB |
3345855 |
complementary to original bottom strand |
| OB |
2655377 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
12035925 |
| Unique alignments |
8480861 |
| Duplicates removed |
3555064 |
| Duplicated alignments were found at 1451198 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
51318369 |
| Methylated C's in CpG context |
6600233 |
| Methylated C's in CHG context |
246352 |
| Methylated C's in CHH context |
3250952 |
| Unmethylated C's in CpG context |
1127010 |
| Unmethylated C's in CHG context |
9781878 |
| Unmethylated C's in CHH context |
30311944 |
| Percentage methylation (CpG context) |
85.4% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
9.7% |
|
|
M-Bias Plot
