Alignment Stats
| Sequences analysed in total |
44905078 |
| Single-end alignments with a unique best hit |
13872301 |
| Sequences without alignments under any condition |
13715942 |
| Sequences that did not map uniquely |
17316835 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
85006558 |
| Methylated C's in CpG context |
11729361 |
| Methylated C's in CHG context |
405370 |
| Methylated C's in CHH context |
4793316 |
| Methylated C's in Unknown context |
3754 |
| Unmethylated C's in CpG context |
1940399 |
| Unmethylated C's in CHG context |
16871129 |
| Unmethylated C's in CHH context |
49266983 |
| Unmethylated C's in Unknown context |
25310 |
| Percentage methylation (CpG context) |
85.8% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3093739 |
original top strand |
| CTOT |
3864472 |
complementary to original top strand |
| CTOB |
3843960 |
complementary to original bottom strand |
| OB |
3070130 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
13872301 |
| Unique alignments |
9514726 |
| Duplicates removed |
4357575 |
| Duplicated alignments were found at 1707009 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
57380051 |
| Methylated C's in CpG context |
7093417 |
| Methylated C's in CHG context |
290465 |
| Methylated C's in CHH context |
3757271 |
| Unmethylated C's in CpG context |
1317260 |
| Unmethylated C's in CHG context |
10875988 |
| Unmethylated C's in CHH context |
34045650 |
| Percentage methylation (CpG context) |
84.3% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
9.9% |
|
|
M-Bias Plot
