Alignment Stats
| Sequences analysed in total |
48376729 |
| Single-end alignments with a unique best hit |
14759690 |
| Sequences without alignments under any condition |
14949228 |
| Sequences that did not map uniquely |
18667811 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
89218342 |
| Methylated C's in CpG context |
11414576 |
| Methylated C's in CHG context |
405883 |
| Methylated C's in CHH context |
5151062 |
| Methylated C's in Unknown context |
3929 |
| Unmethylated C's in CpG context |
2383288 |
| Unmethylated C's in CHG context |
17125947 |
| Unmethylated C's in CHH context |
52737586 |
| Unmethylated C's in Unknown context |
27879 |
| Percentage methylation (CpG context) |
82.7% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3305606 |
original top strand |
| CTOT |
4103783 |
complementary to original top strand |
| CTOB |
4068630 |
complementary to original bottom strand |
| OB |
3281671 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
14759690 |
| Unique alignments |
10432199 |
| Duplicates removed |
4327491 |
| Duplicated alignments were found at 1731966 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
62129400 |
| Methylated C's in CpG context |
7053744 |
| Methylated C's in CHG context |
296595 |
| Methylated C's in CHH context |
4106276 |
| Unmethylated C's in CpG context |
1706032 |
| Unmethylated C's in CHG context |
11393779 |
| Unmethylated C's in CHH context |
37572974 |
| Percentage methylation (CpG context) |
80.5% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
9.9% |
|
|
M-Bias Plot
