Alignment Stats
| Sequences analysed in total |
46105140 |
| Single-end alignments with a unique best hit |
14822810 |
| Sequences without alignments under any condition |
14100920 |
| Sequences that did not map uniquely |
17181410 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
89520561 |
| Methylated C's in CpG context |
11404907 |
| Methylated C's in CHG context |
408791 |
| Methylated C's in CHH context |
5222368 |
| Methylated C's in Unknown context |
3817 |
| Unmethylated C's in CpG context |
2330389 |
| Unmethylated C's in CHG context |
17926332 |
| Unmethylated C's in CHH context |
52227774 |
| Unmethylated C's in Unknown context |
25383 |
| Percentage methylation (CpG context) |
83.0% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
9.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3308195 |
original top strand |
| CTOT |
4126694 |
complementary to original top strand |
| CTOB |
4098178 |
complementary to original bottom strand |
| OB |
3289743 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
14822810 |
| Unique alignments |
10272618 |
| Duplicates removed |
4550192 |
| Duplicated alignments were found at 1967952 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
61305714 |
| Methylated C's in CpG context |
7074055 |
| Methylated C's in CHG context |
296036 |
| Methylated C's in CHH context |
4093092 |
| Unmethylated C's in CpG context |
1645137 |
| Unmethylated C's in CHG context |
11724386 |
| Unmethylated C's in CHH context |
36473008 |
| Percentage methylation (CpG context) |
81.1% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
10.1% |
|
|
M-Bias Plot
