Alignment Stats
| Sequences analysed in total |
46792286 |
| Single-end alignments with a unique best hit |
14534760 |
| Sequences without alignments under any condition |
14155170 |
| Sequences that did not map uniquely |
18102356 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
88484060 |
| Methylated C's in CpG context |
11703467 |
| Methylated C's in CHG context |
417556 |
| Methylated C's in CHH context |
5009940 |
| Methylated C's in Unknown context |
3647 |
| Unmethylated C's in CpG context |
2470410 |
| Unmethylated C's in CHG context |
17414271 |
| Unmethylated C's in CHH context |
51468416 |
| Unmethylated C's in Unknown context |
25966 |
| Percentage methylation (CpG context) |
82.6% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3291229 |
original top strand |
| CTOT |
4005984 |
complementary to original top strand |
| CTOB |
3970736 |
complementary to original bottom strand |
| OB |
3266810 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
14534759 |
| Unique alignments |
10195324 |
| Duplicates removed |
4339435 |
| Duplicated alignments were found at 1752249 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
61108365 |
| Methylated C's in CpG context |
7206035 |
| Methylated C's in CHG context |
301119 |
| Methylated C's in CHH context |
3975802 |
| Unmethylated C's in CpG context |
1781863 |
| Unmethylated C's in CHG context |
11485875 |
| Unmethylated C's in CHH context |
36357671 |
| Percentage methylation (CpG context) |
80.2% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
9.9% |
|
|
M-Bias Plot
