Alignment Stats
| Sequences analysed in total |
55048106 |
| Single-end alignments with a unique best hit |
18068736 |
| Sequences without alignments under any condition |
15701339 |
| Sequences that did not map uniquely |
21278031 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
109172180 |
| Methylated C's in CpG context |
13950028 |
| Methylated C's in CHG context |
447236 |
| Methylated C's in CHH context |
5912338 |
| Methylated C's in Unknown context |
4134 |
| Unmethylated C's in CpG context |
2826959 |
| Unmethylated C's in CHG context |
22196207 |
| Unmethylated C's in CHH context |
63839412 |
| Unmethylated C's in Unknown context |
30681 |
| Percentage methylation (CpG context) |
83.1% |
| Percentage methylation (CHG context) |
2.0% |
| Percentage methylation (CHH context) |
8.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3964570 |
original top strand |
| CTOT |
5099608 |
complementary to original top strand |
| CTOB |
5064998 |
complementary to original bottom strand |
| OB |
3939560 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
18068736 |
| Unique alignments |
12017843 |
| Duplicates removed |
6050893 |
| Duplicated alignments were found at 2424460 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
71613889 |
| Methylated C's in CpG context |
8130684 |
| Methylated C's in CHG context |
313418 |
| Methylated C's in CHH context |
4538975 |
| Unmethylated C's in CpG context |
1878504 |
| Unmethylated C's in CHG context |
13868882 |
| Unmethylated C's in CHH context |
42883426 |
| Percentage methylation (CpG context) |
81.2% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
9.6% |
|
|
M-Bias Plot
