Alignment Stats
| Sequences analysed in total |
42070546 |
| Single-end alignments with a unique best hit |
12831686 |
| Sequences without alignments under any condition |
12357075 |
| Sequences that did not map uniquely |
16881785 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
79974402 |
| Methylated C's in CpG context |
12811467 |
| Methylated C's in CHG context |
384407 |
| Methylated C's in CHH context |
4482631 |
| Methylated C's in Unknown context |
3769 |
| Unmethylated C's in CpG context |
2034144 |
| Unmethylated C's in CHG context |
16655326 |
| Unmethylated C's in CHH context |
43606427 |
| Unmethylated C's in Unknown context |
25194 |
| Percentage methylation (CpG context) |
86.3% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
9.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2921720 |
original top strand |
| CTOT |
3516819 |
complementary to original top strand |
| CTOB |
3492129 |
complementary to original bottom strand |
| OB |
2901018 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
12831686 |
| Unique alignments |
7796529 |
| Duplicates removed |
5035157 |
| Duplicated alignments were found at 1717392 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
47781647 |
| Methylated C's in CpG context |
6612578 |
| Methylated C's in CHG context |
249661 |
| Methylated C's in CHH context |
3301612 |
| Unmethylated C's in CpG context |
1191663 |
| Unmethylated C's in CHG context |
9371177 |
| Unmethylated C's in CHH context |
27054956 |
| Percentage methylation (CpG context) |
84.7% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
10.9% |
|
|
M-Bias Plot
