Alignment Stats
| Sequences analysed in total |
87834637 |
| Single-end alignments with a unique best hit |
25416779 |
| Sequences without alignments under any condition |
26593175 |
| Sequences that did not map uniquely |
35824683 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
157858861 |
| Methylated C's in CpG context |
24048953 |
| Methylated C's in CHG context |
699575 |
| Methylated C's in CHH context |
8140563 |
| Methylated C's in Unknown context |
7073 |
| Unmethylated C's in CpG context |
4179384 |
| Unmethylated C's in CHG context |
29973809 |
| Unmethylated C's in CHH context |
90816577 |
| Unmethylated C's in Unknown context |
50756 |
| Percentage methylation (CpG context) |
85.2% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5706998 |
original top strand |
| CTOT |
7036812 |
complementary to original top strand |
| CTOB |
6991773 |
complementary to original bottom strand |
| OB |
5681196 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
25416779 |
| Unique alignments |
14328882 |
| Duplicates removed |
11087897 |
| Duplicated alignments were found at 3309421 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
87103963 |
| Methylated C's in CpG context |
11148831 |
| Methylated C's in CHG context |
439594 |
| Methylated C's in CHH context |
5924738 |
| Unmethylated C's in CpG context |
2386168 |
| Unmethylated C's in CHG context |
15349838 |
| Unmethylated C's in CHH context |
51854794 |
| Percentage methylation (CpG context) |
82.4% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
10.3% |
|
|
M-Bias Plot
