Alignment Stats
| Sequences analysed in total |
64352550 |
| Single-end alignments with a unique best hit |
19626793 |
| Sequences without alignments under any condition |
18775282 |
| Sequences that did not map uniquely |
25950475 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
123096958 |
| Methylated C's in CpG context |
19042523 |
| Methylated C's in CHG context |
554503 |
| Methylated C's in CHH context |
6406969 |
| Methylated C's in Unknown context |
5721 |
| Unmethylated C's in CpG context |
3213173 |
| Unmethylated C's in CHG context |
24745143 |
| Unmethylated C's in CHH context |
69134647 |
| Unmethylated C's in Unknown context |
38192 |
| Percentage methylation (CpG context) |
85.6% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
8.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4395883 |
original top strand |
| CTOT |
5461739 |
complementary to original top strand |
| CTOB |
5414048 |
complementary to original bottom strand |
| OB |
4355123 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19626793 |
| Unique alignments |
11158024 |
| Duplicates removed |
8468769 |
| Duplicated alignments were found at 2605304 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
68398224 |
| Methylated C's in CpG context |
9042404 |
| Methylated C's in CHG context |
342660 |
| Methylated C's in CHH context |
4601823 |
| Unmethylated C's in CpG context |
1816241 |
| Unmethylated C's in CHG context |
12804713 |
| Unmethylated C's in CHH context |
39790383 |
| Percentage methylation (CpG context) |
83.3% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
10.4% |
|
|
M-Bias Plot
