Alignment Stats
| Sequences analysed in total |
59459431 |
| Single-end alignments with a unique best hit |
20027644 |
| Sequences without alignments under any condition |
17427831 |
| Sequences that did not map uniquely |
22003956 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
119680665 |
| Methylated C's in CpG context |
13746910 |
| Methylated C's in CHG context |
459821 |
| Methylated C's in CHH context |
6669855 |
| Methylated C's in Unknown context |
4804 |
| Unmethylated C's in CpG context |
3405203 |
| Unmethylated C's in CHG context |
23855059 |
| Unmethylated C's in CHH context |
71543817 |
| Unmethylated C's in Unknown context |
33356 |
| Percentage methylation (CpG context) |
80.1% |
| Percentage methylation (CHG context) |
1.9% |
| Percentage methylation (CHH context) |
8.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4488497 |
original top strand |
| CTOT |
5561933 |
complementary to original top strand |
| CTOB |
5521382 |
complementary to original bottom strand |
| OB |
4455831 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
20027643 |
| Unique alignments |
13561841 |
| Duplicates removed |
6465802 |
| Duplicated alignments were found at 2597927 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
80149813 |
| Methylated C's in CpG context |
8313907 |
| Methylated C's in CHG context |
333592 |
| Methylated C's in CHH context |
5271016 |
| Unmethylated C's in CpG context |
2330165 |
| Unmethylated C's in CHG context |
15191561 |
| Unmethylated C's in CHH context |
48709572 |
| Percentage methylation (CpG context) |
78.1% |
| Percentage methylation (CHG context) |
2.1% |
| Percentage methylation (CHH context) |
9.8% |
|
|
M-Bias Plot
