Alignment Stats
| Sequences analysed in total |
78221457 |
| Single-end alignments with a unique best hit |
25374001 |
| Sequences without alignments under any condition |
21899233 |
| Sequences that did not map uniquely |
30948223 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
159318003 |
| Methylated C's in CpG context |
24571414 |
| Methylated C's in CHG context |
738291 |
| Methylated C's in CHH context |
8532254 |
| Methylated C's in Unknown context |
7636 |
| Unmethylated C's in CpG context |
4429949 |
| Unmethylated C's in CHG context |
33811864 |
| Unmethylated C's in CHH context |
87234231 |
| Unmethylated C's in Unknown context |
52101 |
| Percentage methylation (CpG context) |
84.7% |
| Percentage methylation (CHG context) |
2.1% |
| Percentage methylation (CHH context) |
8.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
6511929 |
original top strand |
| CTOT |
6239306 |
complementary to original top strand |
| CTOB |
6176648 |
complementary to original bottom strand |
| OB |
6446118 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
25374001 |
| Unique alignments |
8878355 |
| Duplicates removed |
16495646 |
| Duplicated alignments were found at 3861835 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
54346071 |
| Methylated C's in CpG context |
6587591 |
| Methylated C's in CHG context |
290156 |
| Methylated C's in CHH context |
4259112 |
| Unmethylated C's in CpG context |
1552509 |
| Unmethylated C's in CHG context |
10190620 |
| Unmethylated C's in CHH context |
31466083 |
| Percentage methylation (CpG context) |
80.9% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
11.9% |
|
|
M-Bias Plot
