EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 42172 lines in total Total number of methylation call strings processed: 84344 Final Cytosine Methylation Report ================================= Total number of C's analysed: 847937 Total methylated C's in CpG context: 36235 Total methylated C's in CHG context: 4539 Total methylated C's in CHH context: 30957 Total C to T conversions in CpG context: 79647 Total C to T conversions in CHG context: 170550 Total C to T conversions in CHH context: 526009 C methylated in CpG context: 31.3% C methylated in CHG context: 2.6% C methylated in CHH context: 5.6%