EPI-209_S29_L004_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 42840 lines in total Total number of methylation call strings processed: 85680 Final Cytosine Methylation Report ================================= Total number of C's analysed: 886363 Total methylated C's in CpG context: 36359 Total methylated C's in CHG context: 4680 Total methylated C's in CHH context: 29874 Total C to T conversions in CpG context: 89932 Total C to T conversions in CHG context: 181064 Total C to T conversions in CHH context: 544454 C methylated in CpG context: 28.8% C methylated in CHG context: 2.5% C methylated in CHH context: 5.2%