EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 40167 lines in total Total number of methylation call strings processed: 80334 Final Cytosine Methylation Report ================================= Total number of C's analysed: 735189 Total methylated C's in CpG context: 26507 Total methylated C's in CHG context: 4272 Total methylated C's in CHH context: 27036 Total C to T conversions in CpG context: 75017 Total C to T conversions in CHG context: 151915 Total C to T conversions in CHH context: 450442 C methylated in CpG context: 26.1% C methylated in CHG context: 2.7% C methylated in CHH context: 5.7%