EPI-181_S16_L003_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 40708 lines in total Total number of methylation call strings processed: 81416 Final Cytosine Methylation Report ================================= Total number of C's analysed: 929257 Total methylated C's in CpG context: 36606 Total methylated C's in CHG context: 4835 Total methylated C's in CHH context: 28260 Total C to T conversions in CpG context: 92587 Total C to T conversions in CHG context: 188761 Total C to T conversions in CHH context: 578208 C methylated in CpG context: 28.3% C methylated in CHG context: 2.5% C methylated in CHH context: 4.7%