EPI-175_S14_L003_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 42105 lines in total Total number of methylation call strings processed: 84210 Final Cytosine Methylation Report ================================= Total number of C's analysed: 922866 Total methylated C's in CpG context: 34929 Total methylated C's in CHG context: 4623 Total methylated C's in CHH context: 32787 Total C to T conversions in CpG context: 92139 Total C to T conversions in CHG context: 185850 Total C to T conversions in CHH context: 572538 C methylated in CpG context: 27.5% C methylated in CHG context: 2.4% C methylated in CHH context: 5.4%