EPI-168_S11_L002_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 40710 lines in total Total number of methylation call strings processed: 81420 Final Cytosine Methylation Report ================================= Total number of C's analysed: 903056 Total methylated C's in CpG context: 34111 Total methylated C's in CHG context: 4274 Total methylated C's in CHH context: 32462 Total C to T conversions in CpG context: 90885 Total C to T conversions in CHG context: 185761 Total C to T conversions in CHH context: 555563 C methylated in CpG context: 27.3% C methylated in CHG context: 2.2% C methylated in CHH context: 5.5%