EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 43035 lines in total Total number of methylation call strings processed: 86070 Final Cytosine Methylation Report ================================= Total number of C's analysed: 935821 Total methylated C's in CpG context: 37014 Total methylated C's in CHG context: 5153 Total methylated C's in CHH context: 34502 Total C to T conversions in CpG context: 88670 Total C to T conversions in CHG context: 187468 Total C to T conversions in CHH context: 583014 C methylated in CpG context: 29.5% C methylated in CHG context: 2.7% C methylated in CHH context: 5.6%