EPI-152_S3_L002_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 40472 lines in total Total number of methylation call strings processed: 80944 Final Cytosine Methylation Report ================================= Total number of C's analysed: 892920 Total methylated C's in CpG context: 36021 Total methylated C's in CHG context: 4682 Total methylated C's in CHH context: 29972 Total C to T conversions in CpG context: 83551 Total C to T conversions in CHG context: 178421 Total C to T conversions in CHH context: 560273 C methylated in CpG context: 30.1% C methylated in CHG context: 2.6% C methylated in CHH context: 5.1%