EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 44931 lines in total Total number of methylation call strings processed: 89862 Final Cytosine Methylation Report ================================= Total number of C's analysed: 962189 Total methylated C's in CpG context: 35180 Total methylated C's in CHG context: 5450 Total methylated C's in CHH context: 25780 Total C to T conversions in CpG context: 96534 Total C to T conversions in CHG context: 190101 Total C to T conversions in CHH context: 609144 C methylated in CpG context: 26.7% C methylated in CHG context: 2.8% C methylated in CHH context: 4.1%