EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 43312 lines in total Total number of methylation call strings processed: 86624 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1027304 Total methylated C's in CpG context: 33039 Total methylated C's in CHG context: 5070 Total methylated C's in CHH context: 22877 Total C to T conversions in CpG context: 115253 Total C to T conversions in CHG context: 203794 Total C to T conversions in CHH context: 647271 C methylated in CpG context: 22.3% C methylated in CHG context: 2.4% C methylated in CHH context: 3.4%