EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 46023 lines in total Total number of methylation call strings processed: 92046 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1025555 Total methylated C's in CpG context: 35599 Total methylated C's in CHG context: 5344 Total methylated C's in CHH context: 23705 Total C to T conversions in CpG context: 105049 Total C to T conversions in CHG context: 201655 Total C to T conversions in CHH context: 654203 C methylated in CpG context: 25.3% C methylated in CHG context: 2.6% C methylated in CHH context: 3.5%